Publications

Under Review

Peer Reviewed Article

• Aydogdu A, Escudier R, Hernandez-Lasheras J, Amadio C, Pistoia J, Zarokanellos ND, Cossarini G, Remy E and Mourre B (2025) Glider observations in the Western Mediterranean Sea: their assimilation and impact assessment using four analysis and forecasting systems. Front. Mar. Sci. 12:1456463. doi: 10.3389/fmars.2025.1456463

• Yang, C., Bourdalle-Badie, R., Drevillon, M., Amaya, D., Aouf, L., Aydogdu, A., Barton, B., Bell, M., Boyer, T., Blauw, A. and Carton, J., et. al, (2025). Gathering users and developers to shape together the next-generation ocean reanalyses: Ocean reanalyses workshop of the European Copernicus Marine Service. Bulletin of the American Meteorological Society, 106(2), E419-E429. doi: 10.1175/BAMS-D-24-0034.1

• Teruzzi, A., Aydogdu, A., Amadio, C., Clementi, E., Colella, S., Di Biagio, V., Drudi, M., Fanelli, C., Feudale, L., Grandi, A., Miraglio, P., Pisano, A., Pistoia, J., Reale, M., Salon, S., Volpe, G., and Cossarini, G.: Anomalous 2022 deep-water formation and intense phytoplankton bloom in the Cretan area, in: 8th edition of the Copernicus Ocean State Report (OSR8), edited by: von Schuckmann, K., Moreira, L., Grégoire, M., Marcos, M., Staneva, J., Brasseur, P., Garric, G., Lionello, P., Karstensen, J., and Neukermans, G., Copernicus Publications, State Planet, 4-osr8, 15, doi: 10.5194/sp-4-osr8-15-2024, 2024.

• von Schuckmann, K., Moreira, L., Cancet, M., Gues, F., Autret, E., Aydogdu, A., Castrillo, L., Ciani, D., Cipollone, A., Clementi, E., Cossarini, G., de Pascual-Collar, A., De Toma, V., Gehlen, M., Giesen, R., Drevillon, M., Fanelli, C., Hodges, K., Jandt-Scheelke, S., Jansen, E., Juza, M., Karagali, I., Lagemaa, P., Lien, V., Lima, L., Lyubartsev, V., Maljutenko, I., Masina, S., McAdam, R., Miraglio, P., Morrison, H., Panteleit, T. R., Pisano, A., Pujol, M.-I., Raudsepp, U., Raj, R., Stoffelen, A., Van Gennip, S., Veillard, P., and Yang, C.: The state of the ocean in the northeastern Atlantic and adjacent seas, in: 8th edition of the Copernicus Ocean State Report (OSR8), edited by: von Schuckmann, K., Moreira, L., Grégoire, M., Marcos, M., Staneva, J., Brasseur, P., Garric, G., Lionello, P., Karstensen, J., and Neukermans, G., Copernicus Publications, State Planet, 4-osr8, 2, 10.5194/sp-4-osr8-2-2024, 2024.

• Coppini, G., Clementi, E., Cossarini, G., Salon, S., Korres, G., Ravdas, M., Lecci, R., Pistoia, J., Goglio, A. C., Drudi, M., Grandi, A., Aydogdu, A., Escudier, R., Cipollone, A., Lyubartsev, V., Mariani, A., Cretì, S., Palermo, F., Scuro, M., Masina, S., Pinardi, N., Navarra, A., Delrosso, D., Teruzzi, A., Di Biagio, V., Bolzon, G., Feudale, L., Coidessa, G., Amadio, C., Brosich, A., Miró, A., Alvarez, E., Lazzari, P., Solidoro, C., Oikonomou, C., and Zacharioudaki, A.: The Mediterranean Forecasting System – Part 1: Evolution and performance, Ocean Sci., 19, 1483–1516, doi: 10.5194/os-19-1483-2023, 2023.

• Aydogdu, A., Miraglio, P., Escudier, R., Clementi, E., and Masina, S.: The dynamical role of upper layer salinity in the Mediterranean Sea, in: 7th edition of the Copernicus Ocean State Report (OSR7), edited by: von Schuckmann, K., Moreira, L., Le Traon, P.-Y., Grégoire, M., Marcos, M., Staneva, J., Brasseur, P., Garric, G., Lionello, P., Karstensen, J., and Neukermans, G., Copernicus Publications, State Planet, 1-osr7, 6, doi: 10.5194/sp-1-osr7-6-2023, 2023.

• Cipollone, A., Banerjee, D. S., Iovino, D., Aydogdu, A., and Masina, S.: Bivariate sea-ice assimilation for global-ocean analysis–reanalysis, Ocean Sci., 19, 1375–1392, doi: 10.5194/os-19-1375-2023, 2023.

• Cheng, S., Chen, Y., Aydoğdu, A., Bertino, L., Carrassi, A., Rampal, P., and Jones, C. K. R. T.: Arctic sea ice data assimilation combining an ensemble Kalman filter with a novel Lagrangian sea ice model for the winter 2019–2020, The Cryosphere, 17, 1735–1754, doi: 10.5194/tc-17-1735-2023, 2023.

• Ilicak,M., S. Causio, S. Ciliberti,G. Coppini, L. Lima, A. Aydogdu, D. Azevedo, R. Lecci, D. U. Cetin, S. Masina, E. Peneva, M. Gunduz, N. Pinardi, 2022. The Black Sea overturning circulation and its indicator of change. Copernicus Ocean State Report, issue 6, Journal of Operational Oceanography, 15:sup1, 1-220. doi: doi.org/10.1080/1755876X.2022.20951690

• Masina, S., N. Pinardi, A. Cipollone, D. S. Banerjee, V. Lyubartsev, K. von Schuckmann, L. Jackson, R. Escudier, E. Clementi, A. Aydogdu, D. Iovino, 2022. The Atlantic Meridional Overturning Circulation forcing the mean sea level in the Mediterranean Sea through the Gibraltar transport. Copernicus Ocean State Report, issue 6, Journal of Operational Oceanography, 15:sup1, 1-220. doi: doi.org/10.1080/1755876X.2022.2095169

• Escudier, R., Clementi, E., Cipollone, A., Pistoia, J., Drudi, M., Grandi, A., Lyubartsev, V., Lecci, R., Aydogdu, A., Delrosso, D., Omar, M., Masina, S., Coppini, G. and Pinardi, N. (2021) A High Resolution Reanalysis for the Mediterranean Sea. Front. Earth Sci. 9:702285. doi: 10.3389/feart.2021.702285

• Le Traon, P.Y., Abadie, V., Ali, A., Aouf, L., Artioli, Y., Ascione, I., Autret, E., Aydogdu, A. et al., 2021. The Copernicus Marine Service from 2015 to 2021: six years of achievements Special Issue Mercator Océan Journal #57. doi : https://doi.org/10.48670/moi-cafr-n813

• Ciliberti, S.A., Grégoire, M., Staneva, J., Palazov, A., Coppini, G., Lecci, R., Peneva, E., Matreata, M., Marinova, V., Masina, S., Pinardi, N., Jansen, E., Lima, L., Aydoğdu, A., Creti’, S., Stefanizzi, L., Azevedo, D., Causio, S., Vandenbulcke, L., Capet, A., Meulders, C., Ivanov, E., Behrens, A., Ricker, M., Gayer, G., Palermo, F., Ilicak, M., Gunduz, M., Valcheva, N., Agostini, P. (2021) Monitoring and Forecasting the Ocean State and Biogeochemical Processes in the Black Sea: Recent Developments in the Copernicus Marine Service. J. Mar. Sci. Eng., 9, 1146. doi: 10.3390/jmse9101146

• Conti, G., Aydoğdu, A., Gualdi, S., Navarra, A., Tribbia, J. (2021) On the physical nudging equations. Clim Dyn. doi: 10.1007/s00382-021-05972-w

• Bonaduce A, Cipollone A, Johannessen JA, Staneva J, Raj RP and Aydogdu A (2021) Ocean Mesoscale Variability: A Case Study on the Mediterranean Sea From a Re-Analysis Perspective. Front. Earth Sci. 9:724879. doi: 10.3389/feart.2021.724879

• Lima, L., Ciliberti, S.A., Aydoğdu, A., Masina, S., Escudier, R., Cipollone, A., Azevedo, D., Causio, S., Peneva, E., Lecci, R., Clementi, E., Jansen, E., Ilicak, M., Cretì, S., Stefanizzi, L., Palermo, F. and Coppini, G. (2021) Climate Signals in the Black Sea From a Multidecadal Eddy-Resolving Reanalysis. Front. Mar. Sci. 8:710973. doi: 10.3389/fmars.2021.710973

• Sampson, C., Carrassi, A., Aydoğdu, A., Jones, C.K.R.T. Ensemble Kalman filter for nonconservative moving mesh solvers with a joint physics and mesh location update. Q J R Meteorol Soc. 2021; 1– 23. doi: 10.1002/qj.3980

• Cheng S., Aydoğdu A., Rampal P., Carrassi A., Bertino L.: Probabilistic Forecasts of Sea Ice Trajectories in the Arctic: Impact of Uncertainties in Surface Wind and Ice Cohesion, Oceans. 2020; 1(4):326-342. doi: 10.3390/oceans1040022

• Aydoğdu, A., Carrassi, A., Guider, C. T., Jones, C. K. R. T., and Rampal, P.: Data assimilation using adaptive, non-conservative, moving mesh models, Nonlin. Processes Geophys., 26, 175-193, doi:10.5194/npg-26-175-2019, 2019.

• Aydoğdu, A., Pinardi, N., Özsoy, E., Danabasoglu, G., Gürses, Ö., and Karspeck, A.: Circulation of the Turkish Straits System under interannual atmospheric forcing, Ocean Sci., 14, 999-1019, doi:10.5194/os-14-999-2018, 2018.

• Aydoğdu, A., Hoar, T. J., Vukicevic, T., Anderson, J. L., Pinardi, N., Karspeck, A., Hendricks, J., Collins, N., Macchia, F., and Ozsoy, E.: OSSE for a sustainable marine observing network in the Sea of Marmara, Nonlin. Processes Geophys., 25, 537-551, doi:10.5194/npg-25-537-2018, 2018.

• Aydoğdu, A., Pinardi, N., Pistoia, J., Martinelli, M., Belardinelli, A., Sparnocchia, S., Assimilation experiments for the Fishery Observing System in the Adriatic Sea, Journal of Marine Systems, Volume 162, October 2016, Pages 126-136, ISSN 0924-7963, doi:10.1016/j.jmarsys.2016.03.002

• Sparnocchia, S., Nair, R., Petihakis, G., Aydogdu, A., Dobricic, S., Farcy, P., Martinelli, M., Petersen, W., Petit de la Villeon, L., An interlinked coastal observatory network for Europe (2016) Journal of Operational Oceanography, Vol. 9, Iss. sup1, 2016. doi: 10.1080/1755876X.2015.1114808

Dissertations

Aydogdu, Ali. (2017). Advanced modeling and data assimilation methods for the design of sustained marine monitoring networks (Doctoral dissertation). Retrieved from Venezia, Archivio Universita Ca’ Foscari, Tesi Dottorato. (Italy, 2017-02-07)

Aydogdu, Ali. (2012). A coupled modelling attempt of hydrodynamics and ecosystem of northern levantine basin (Master Thesis). Retrieved from Mersin, METU Thesis Collection. (Turkey, 2012-07-12)

Book Chapter

• Von Schuckmann K., Le Traon P-Y., Smith N., Pascual A., Djavidnia S., Gattuso J-P., Grégoire M., et al. (2021), Copernicus Marine Service Ocean State Report, Issue 5. Journal of Operational Oceanography, 14:sup1, 1-185, DOI: 10.1080/1755876X.2021.1946240

Gürses, Ö., Aydoğdu, A., Pinardi, N., and Özsoy, E. (2017). A finite element modeling study of the Turkish Straits System. In Öztürk, B. et al., editor, The Sea of Marmara - Marine Biodiversity, Fisheries, Conservations and Governance, pages 169 184. TUDAV Publication.

Ozsoy, E., Sofianos, S., Gertman, I., Mantziafou, A., Aydoğdu, A., Georgiou, S., Tutsak, E., Lascaratos, A., Hecht, A. and Latif, M. A. Deep-Water Variability and Interbasin Interactions in the Eastern Mediterranean Sea, in The Mediterranean Sea: Temporal Variability and Spatial Patterns (2014) (eds G. L. E. Borzelli, M. Gacic, P. Lionello and P. Malanotte-Rizzoli), John Wiley & Sons, Inc., Oxford. doi:10.1002/9781118847572.ch7

Poster

T. Hoar, J. Anderson, N. Collins, H. Kershaw, J. Hendricks, K. Raeder, G. Romine, A. Mizzi, J. Barre, B. Gaubert, L. Madaus, A. Aydogdu, J. Raeder, H. Arango, A. Moore, C. Edwards, E. Curchitser, R. Escudier, R. Dussin, C. Bitz, Y. Zhang, and P. Shrestha. DART: A Community Facility Providing State-of-the-Art, Efficient Ensemble Data Assimilation for Large (Coupled) Geophysical Models. AGU Meeting 2016

Ali Aydoğdu, Tim Hoar, Tomislava Vukicevic, Jeffrey Anderson, Alicia Karspeck, Gokhan Danabasoglu, Nadia Pinardi, Jonathan Hendricks, Nancy Collins, Francesca Macchia. Observing System Simulation Experiments in the Marmara Sea. Numerical Modeling, Predictability and Data Assimilation in Weather, Ocean and Climate: A Symposium Honoring the Legacy of Anna Trevisan. October 17-20, 2017. Bologna, Italy.